Y-STR data of the Yfiler Plus panel in population of north-eastern Poland
cytuj
pobierz pliki
RIS BIB ENDNOTEChoose format
RIS BIB ENDNOTEDane populacyjne dla markerów zestawu Yfiler Plus w populacji Polski północno-wschodniej = Y-STR data of the Yfiler Plus panel in population of north-eastern Poland
Publication date: 21.04.2023
Archives of Forensic Medicine and Criminology, 2022, Vol. 72 (4), pp. 200 - 210
https://doi.org/10.4467/16891716AMSIK.22.022.17622Authors
Dane populacyjne dla markerów zestawu Yfiler Plus w populacji Polski północno-wschodniej = Y-STR data of the Yfiler Plus panel in population of north-eastern Poland
Wykorzystanie nowych możliwości o wysokiej rozdzielczości i identyfikacji sądowej w zakresie badań populacji, oferowanych przez nowe metody multipleksowe (jak Yfiler Plus), ma kluczowe znaczenie w sprawach genetyczno-sądowych. Opracowanie baz danych z częstością haplotypów jest niezbędne do pełnego wykorzystania nowych możliwości w zakresie oznaczania chromosomu Y.
Cel pracy: Opracowanie bazy haplotypów zestawu Yfiler Plus dla próby populacyjnej 534 mężczyzn z Polski północno-wschodniej oraz obliczenie parametrów przydatności w badaniach genetyczno-sądowych.
Materiały i metody: Badanie przeprowadzono na próbie populacyjnej 534 niespokrewnionych mężczyzn z obszaru Polski północno-wschodniej z użyciem panelu Yfiler Plus obejmującego 27 markerów zlokalizowanych na chromosomie Y.
Wyniki: Cztery haplotypy pojawiły się dwukrotnie. Zdolność dyskryminacyjna (DC) całego zestawu wyniosła 0,9925. Najwyższą wartość zróżnicowania genowego (GD) obliczono dla DYS518 (0,86) należącego do markerów szybkomutujących, zaś najniższą GD dla DYS392 (0,42).
Wnioski: Wyniki wskazują wskazują na konieczność prowadzenia dalszych badań i obserwacji zmian, zarówno w różnych regionach Polski, jak i w całej Europie.
Supplementary Material in the electronic version: The allele frequencies of the Yfiler Plus markers (Suppl. Table I), The haplotypes [534 samples] (Suppl. Table II).
Chakraborty R, Stivers DN, Su B, Zhong Y, Budowle The utility of short tandem repeat loci beyond human identification: Implications for development of new DNA typing systems. Electrophoresis 1999; 20: 1682-1696.
Abreu-Głowacka M, Żaba Cz, Koralewska-Kordel M, Michalak E, Przybylski Z. Polish population data for 17 Y-STRs and 8 Y-SNPs markers. Arch Med Sąd Krym 2013; 58: 201-215.
Tilford CA, Kuroda-Kawaguchi T, Skaletsky H, Rozen S, Brown LG, Rosenberg M, McPherson JD, Wylie K, Sekhon M, Kucaba TA, et al. A physical map of the human Y chromosome. Nature 2001; 409: 943-945.
Ballantyne KN, Goedbloed M, Fang R, Schaap O, Lao O, Wollstein A, Choi Y, van Duijn K, Vermeulen M, Brauer S, et al. Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic Am J Hum Genet 2010; 87: 341-53.
Mertoglu E, Filoglu G, Zorlu T, Bulbul Estimation of the Y-chromosomal short tandem repeat (Y-STR) mutation rates in Turkey. Turk J Biochem 2018; 43: 142-150.
Ballantyne KN, Keerl V, Wollstein A, Choi Y, Zuniga SB, Ralf A, Vermeulen M, de Knijff P, Kayser M. A new future of forensic Y-chromosome analysis: rapidly mutating Y-STRs for differentiating male relatives and paternal Forensic Sci Int Genet 2012; 6: 208-18.
Gopinath S, Zhong C, Nguyen V, Ge J, Lagacé RE, Short ML, Mulero Developmental validation of the Yfiler(®) Plus PCR Amplification Kit: An enhanced Y-STR multiplex for casework and database applications. Forensic Sci Int Genet 2016; 24: 164-175.
De Knijff Messages through Bottlenecks: On the Combined Use of Slow and Fast Evolving Polymorphic Markers on the Human Y Chromosome. Am J Hum Genet 2000, 67: 1055-1061.
Rapone C, D’Atanasio E, Agostino A, Mariano M, Papaluca MT, Cruciani F, Berti A. Forensic genetic value of a 27 Y-STR loci multiplex (Yfiler(®) Plus kit) in an Italian population sample. Forensic Sci Int Genet 2016; 21: e1-5.
Robino C, Ralf A, Pasino S, De Marchi MR, Ballantyne KN, Barbaro A, Bini C, Carnevali E, Casarino L, Di Gaetano C, et Development of an Italian RM Y-STR haplotype database: Results of the 2013 GEFI collaborative exercise. Forensic Sci Int Genet 2015; 15: 56-63. Erratum in: Forensic Sci Int Genet 2018 Feb 7; Erratum in: Forensic Sci Int Genet 2018 Apr 4.
Rębała K, Branicki W, Pawłowski R, Spólnicka M, Kupiec T, Parys-Proszek A, Woźniak M, Grzybowski T, Boroń M, Wróbel M, et al. Recommendations of the Polish Speaking Working Group of the International Society for Forensic Genetics on forensic Y chromosome typing. Arch Med Sadowej Kryminol 2020; 70: 1-18.
https://statystyka.policja.pl/st/przestepstwa-ogolem/przestepstwa-kryminalne/zgwalcenie/122293,Zgwalcenie.html – Pliki do pobrania (XLSX, DOCX). Data dostępu: 13.12.2022
Gouy A, Zieger STRAF-A convenient online tool for STR data evaluation in forensic genetics. Forensic Sci Int Genet 2017; 30: 148-151.
Ashirbekov Y, Sabitov Z, Aidarov B, Abaildayev A, Junissova Z, Cherusheva A, Saidamarova VV, Sharipov K, Ramankulov Y, Zhabagin Genetic Polymorphism of 27 Y-STR Loci in the Western Kazakh Tribes from Kazakhstan and Karakalpakstan, Uzbekistan. Genes 2022; 13: 1826. 10.3390/genes13101826.
Purps J, Siegert S, Willuweit S, Nagy M, Alves C, Salazar R, Angustia SM, Santos LH, Anslinger K, Bayer B, et al. A global analysis of Y-chromosomal haplotype diversity for 23 STR loci. Forensic Sci Int Genet 2014; 12: 12-23.
Abreu-Glowacka M, Pepinski W, Michalak E, Konarzewska M, Zak K, Skawronska M, Niemcunowicz-Janica A, Soltyszewski I, Krajewski P, Zaba C. Population Genetic Data of 30 Insertion-Deletion Markers in the Polish Population. Genes. 2022; 13: 1683. 10.3390/genes13101683.
Aliferi A, Thomson J, McDonald A, Molin V, Ferguson S, Vanhinsbergh D, Syndercombe D, Ballard UK and Irish Y-STR population data — A catalogue of variant alleles. For Sci Int Genetics 2018; 34: e1-6.
García O, Yurrebaso I, Mancisidor ID, López S, Alonso S, Gusmão L. Data for 27 Y-chromosome STR loci in the Basque Country autochthonous population. Forensic Sci Int Genet 2016; 20: e10-e12.
Westen AA, Kraaijenbrink T, Clarisse L, Grol LJ, Willemse P, Zuniga SB, De R, Schouten R, Der V, Weiler NE et al. Analysis of 36 Y-STR marker units including a concordance study among 2085 Dutch males. Forensic Sci Int Genet 2015; 14: 174-81.
Huszar TI, Bodmer WF, Hutnik K, Wetton JH, Jobling Sequencing of autosomal, mitochondrial and Y-chromosomal forensic markers in the People of the British Isles cohort detects population structure dominated by patrilineages. Forensic Sci Int Genet. 2022; 59: 102725. doi:10.1016/j.fsigen.2022.102725.
Lacerenza D, Aneli S, Di C, Critelli R, Piazza A, Matullo G, Culigioni C, Robledo R, Robino C, Calò C. Investigation of extended Y chromosome STR haplotypes in Sardinia. Forensic Sci Int Genet 2017; 27: 172-174.
Claerhout S, Roelens J, Der V, Verstraete P, Larmuseau MHD, Decorte R. Ysurnames? The patrilineal Y-chromosome and surname correlation for DNA kinship research’, For Sci Int Genet 2020; 44: 102204.
Pickrahn I, Müller E, Zahrer W, Dunkelmann B, Cemper-Kiesslich J, Kreindl G, Neuhuber Yfiler(®) Plus amplification kit validation and calculation of forensic parameters for two Austrian populations. Forensic Sci Int Genet 2016; 21: 90-94.
Niederstätter H, Berger B, Kayser M, Parson Differences in urbanization degree and consequences on the diversity of conventional vs. rapidly mutating Y-STRs in five municipalities from a small region of the Tyrolean Alps in Austria. Forensic Sci Int Genet 2016; 24: 180-193.
Zieger M, Utz S. The Y-chromosomal haplotype and haplogroup distribution of modern Switzerland still reflects the alpine divide as a geographical barrier for human migration. For Sci Int Genet 2020; 48: 102345.
Zgonjanin D, Alghafri R, Antov M, Stojiljković G, Petković S, Vuković R, Drašković Genetic characterization of 27 Y-STR loci with the Yfiler® Plus kit in the population of Serbia’, Forensic Sci Int Genet 2017; 31: e48-49.
Primorac D, Škaro V, Projić P, Missoni S, Zanki H, Merkaš S, Šarac J, Novokmet N, Ledić A, Makar A et al. Croatian genetic heritage: an updated Y-chromosome Croat Med J 2022; 63: 273-286.
Kayser M, Lao O, Anslinger K, Augustin C, Bargel G, Edelmann J, Elias S, Heinrich M, Henke J, Henke L et Significant genetic differentiation between Poland and Germany follows present-day political borders, as revealed by Y-chromosome analysis. Hum Genet 2005; 117: 428-43.
Olofsson JK, Mogensen HS, Buchard A, Børsting C, Morling N. Forensic and population genetic analyses of Danes, Greenlanders and Somalis typed with the Yfiler® Plus PCR amplification kit. Forensic Sci Int Genet 2015; 16: 232-236.
Pamjav H, Fóthi Á, Fehér T, Fóthi E. A study of the Bodrogköz population in north-eastern Hungary by Y chromosomal haplotypes and haplogroups. Mol Genet Genomics. 2017; 292: 883-894. doi:1007/s00438-017-1319-z.
Sterlinko H, Pajnic IZ, Balazic J, Komel R. Human Y-specific STR haplotypes in a Slovenian population sample. Forensic Sci Int. 2001; 120: 226-228. doi:1016/s0379-0738(01)00390-5.
Woźniak M, Derenko M, Malyarchuk B, Dambueva I, Grzybowski T, Miścicka-Sliwka Allelic and haplotypic frequencies at 11 Y-STR loci in Buryats from South-East Siberia. Forensic Sci Int. 2006; 164: 271-275. doi:10.1016/j.forsciint.2005.11.023.
Semikhodskii A, Krassotkin Y, Makarova T, Zavarin V, Ilina V, Sutyagina D. Population genetic data and forensic parameters of the 27 Y-STR panel Yfiler® Plus in Russian population [published correction appears in Int J Legal Med. 2021 May 6]. Int J Legal Med 2021; 135: 1785-1787. doi:1007/s00414-021-02599-8.
Hallenberg C, Tomas C, Simonsen B, Morling Y-chromosome STR haplotypes in males from Greenland. Forensic Sci Int Genet 2009; 3: e145-e146. doi:10.1016/j.fsigen.2008.11.012.
Jankauskiene J, Kukiene J, Ivanova V, Aleknaviciute Population data and forensic genetic evaluation with the Yfiler™ Plus PCR Amplification kit in the Lithuanian population. Forensic Sci Int Genet Suppl Ser 2017; 6: e606-607.
Szołtysek M. Rethinking Eastern Europe: Household-formation patterns in the Polish-Lithuanian Commonwealth and European family systems. Contin Change 2008; 23: 389-427. doi:1017/S0268416008006929.
Górska-Szymczak J, Górski The Federal Structure of the Polish–Lithuanian Commonwealth in the 16–18 Centuries. Confrontation and Cooperation: 1000 Years of Polish-German-Russian Relations. 2019; 5: 21-28. DOI: 10.2478/conc-2019-0003.
Pepinski W, Niemcunowicz-Janica A, Skawronska M, Koc-Zorawska E, Janica J, Soltyszewski Allele distribution of 15 STR loci in a population sample of the Lithuanian minority residing in the Northeastern Poland. Forensic Sci Int 2004; 144: 65–67. do- i:10.1016/j.forsciint.2004.01.023.
Pepinski W, Niemcunowicz-Janica A, Skawronska M, Janica J, Koc-Zorawska E, Aleksandrowicz-Bukin M, Soltyszewski Genetic data on 15 STR loci in the ethnic group of Polish Tatars residing in the area of Podlasie (Northeastern Poland). Forensic Sci Int 2005; 149: 263-265. doi:10.1016/j.forsciint.2004.07.009.
Janica J, Pepiński W, Niemcunowicz-Janica A, Skawrońska M, Sołtyszewski I, Berent J. Polimorfizm loci Y-STR wśród ludności Polski północno-wschodniej w aspektach zróżnicowania etnicznego i przydatności w badaniach medyczno-sądowych [Ethnic variation and forensic usefulness of Y-STR loci in inhabitants of northeastern Poland]. Arch Med Sadowej Kryminol 2008; 58: 17-21.
Janica J, Pepinski W, Niemcunowicz-Janica A, Skawronska M, Aleksandrowicz-Bukin M, Ptaszynska-Sarosiek I, Koc- Zorawska E. Y-chromosome STR haplotypes and alleles in the ethnic group of Polish Tatars residing in the Northeastern Poland. Forensic Sci Int 2005; 150: 91-95. doi:1016/j.forsciint.2004.08.012.
Information: Archives of Forensic Medicine and Criminology, 2022, Vol. 72 (4), pp. 200 - 210
Article type: Original article
Titles:
Dane populacyjne dla markerów zestawu Yfiler Plus w populacji Polski północno-wschodniej = Y-STR data of the Yfiler Plus panel in population of north-eastern Poland
Y-STR data of the Yfiler Plus panel in population of north-eastern Poland
Medical University of Białystok
Medical University of Białystok
Department of Forensic Medicine,
Medical University of Białystok
Medical University of Białystok
Published at: 21.04.2023
Received at: 31.01.2023
Accepted at: 27.03.2023
Article status: Open
Licence: CC-BY-NC-SA
Article financing:
Percentage share of authors:
Article corrections:
-Publication languages:
Polish, EnglishView count: 633
Number of downloads: 377
Suggested citations: Nature