Adl S. M., Simpson A. G. B., Farmer M. A., Andersen R. A., Anderson O. R., Barta J. R., Bowser S. S., Brugerolle G., Fensome R. A., Fredericq S., James T. Y., Karpov S., Kugrens P., Krug J., Lane C. E., Lewis L. A., Lodge J., Lynn D. H., Mann D. G., McCourt R. M., Mendoza L., Moestrup Ø., Mozley-Standridge S. E., Nerad T. A., Shearer C. A., Smirnov A. V., Spiegel F. W., Taylor M. F. J. R. (2005) The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J. Eukaryot. Microbiol. 52: 399–451
Altekar G., Dwarkadas S., Huelsenbeck J. P., Ronquist F. (2004) Parallel metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407–415
Atkins M. S., Teske A. P., Anderson O. R. (2000) A survey of flagellate diversity at four deep-sea hydrothermal vents in the eastern Pacific Ocean using structural and molecular approaches. J. Eukaryot. Microbiol. 47: 400–411
Cann J. P., Page F. C. (1982) Fine structure of small free-living Paramoeba (Amoebida) and taxonomy of the genus. J. Mar. Biol. Ass.U. K. 62: 25–43
Cavalier-Smith T., Chao E.-Y., Oates B. (2004) Molecular phylogeny of Amoebozoa and evolutionary significance of the unikont Phalansterium. Eur. J. Protistol. 40: 21–48
Chatton E. (1953) Ordre des Amoebiens nus ou Amoebaea. In: Traité de Zoologie, (Ed. P. Grassé). Masson, Paris, 1: 5–91
Dalton A. J. (1955) A chrome-osmium fixative for electron microscopy. Anat. Rec. 121: 281
Dyková I., Nowak B. F., Crosbie P. B. B., Fiala I., Pecková H., Adams M. B., Macháčková B., Dvořáková H. (2005) Neoparamoeba branchiphila n. sp., and related species of the genus Neoparamoeba Page, 1987: morphological and molecular characterization of selected strains. J. Fish Dis. 28: 49–64
Dyková I., Nowak B., Pecková H., Fiala I., Crosbie P., Dvořáková H. (2007) Phylogeny of Neoparamoeba strains isolated from marine fish and invertebrates as inferred from SSU rDNA sequences. Dis. Aquat. Org. 74: 57–65
Dyková I., Fiala I., Pecková H. (2008) Neoparamoeba spp. And their eukaryotic endosymbionts similar to Perkinsela amoebae (Hollande, 1980): Coevolution demonstrated by SSU Rrna gene phylogenies. Eur. J. Protistol. 44: 269–277
Dyková I., Kostka M., Pecková H. (2011) Three new species of the amoebozoan genus Vexillifera Schaeffer, 1926. Acta Protozool. 50: 55–63
Fahrni J. F., Bolivar I., Berney C., Nassonova E., Smirnov A., Pawlowski J. (2003) Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes. Mol. Biol. Evol. 20: 1881–1886
Fiala I., Dyková I. (2003) Molecular characterization of Neoparamoeba strains isolated from gills of Scophthalmus maximus. Dis. Aquat. Org. 55: 11–16
Galtier N., Gouy M., Gautier C. (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12: 543–548
Grell K. G. (1961) Über den Nebenkörper von Paramoeba Schaudinn. Arch. Protistenkd. 105: 303–312
Grell K. G., Benwitz G. (1966) Die Zellhülle von Paramoeba eilhardi Schaudinn. Z. Naturforsch. 21b: 600–601
Grell K. G., Benwitz G. (1970) Ultrastruktur mariner Amöben. I. Paramoeba eilhardi Schaudinn. Arch. Protistenkd. 112: 119–137
Harris J. R. (1999) Negative staining of thinly spread biological particulates. In: Electron microscopy methods and protocols, (Ed. M. A. Nasser Hajibagheri). Methods in molecular biology, Humana Press, Totowa, NJ, 117: 13–30
Hausmann K., Hülsmann N., Polianski I., Schade S., Weitere M. (2002a) Composition of benthic protozoan communities along a depth transect in the eastern Mediterranean Sea. Deep-Sea Res. I 49: 1959–1970
Hausmann K., Weitere M., Wolf M., Arndt H. (2002b) Meteora sporadica gen. nov. et sp. nov. (Protista incertae sedis) – an extraordinary free-living protist from the Mediterranean deep sea. Eur. J. Protistol. 38: 171–177
Hollande A. (1980) Identification du parasome (Nebenkern) de Janickina pigmentifera à un symbionte (Perkinsiella amoebae nov. gen.-nov. sp.) apparenté aux flagellés kinetoplastidies. Protistologica 16: 613–625
Huelsenbeck J. P., Ronquist F. (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754–755
Janicki C. (1912) Paramoebenstudien (P. pigmentifera Grassi und P. chaetognatha Grassi). Z. Wiss. Zool. 103: 449–518
Jobb G. (2008) TREEFINDER version of June 2008. Munich, Germany. Distributed by the author at www.treefinder.de
Kudryavtsev A., Pawlowski J., Hausmann K. (2009) Description and phylogenetic relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida). J. Eukaryot. Microbiol. 56: 495–503
Kudryavtsev A., Wylezich C., Pawlowski J. (2011) Ovalopodium desertum n. sp. and the phylogenetic relationships of Cochliopodiidae (Amoebozoa). Protist 162: 571–589
Maniatis T., Fritsch E. F., Sambrook J. (1982) Molecular cloning, a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Medlin L., Elwood H. J., Stickel S., Sogin M. L. (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding regions. Gene 71: 491–499
Moran D. M., Anderson O. R., Dennett M. R., Caron D. A., Gast R. J. (2007) A description of seven Antarctic marine gymnamoebae including a new subspecies, two new species and a new genus: Neoparamoeba aestuarina antarctica n. subsp., Platyamoeba oblongata n. sp., Platyamoeba contorta n. sp. and Vermistella antarctica n. gen. n. sp. J. Eukaryot. Microbiol. 54: 169–183
Mullen T. E., Nevis K. R., O’Kelly C. J., Gast R. J., Frasca S. (2005) Nuclear small-subunit ribosomal RNA gene-based characterization, molecular phylogeny and PCR detection of the Neoparamoeba from western Long Island Sound lobster. J. Shellfish Res. 24: 719–731
Page F. C. (1970) Two new species of Paramoeba from Maine. J. Protozool. 17: 421–427
Page F. C. (1973) Paramoeba: a common marine genus. Hydrobiologia 41: 183–188
Page F. C. (1983) Marine Gymnamoebae. Inst. Terr. Ecol., Cambridge Page F. C. (1987) The classification of ‘naked’ amoebae (phylum Rhizopoda). Arch. Protistenkd. 133: 199–217
Peglar M. T., Amaral Zettler L. A., Anderson O. R., Nerad T. A., Gillevet P. M., Mullen T. E., Frasca S., Jr., Silberman J. D., O’Kelly C. J., Sogin M. L. (2003) Two new small-subunit ribosomal RNA gene lineages within the subclass Gymnamoebia. J. Eukaryot. Microbiol. 50: 224–232
Ronquist F., Huelsenbeck J. P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574
Smirnov A. V. (1999) An illustrated survey of gymnamoebae – Euamoebida and Leptomyxida (Rhizopoda, Lobosea), isolated from anaerobic sediments of the Nivå Bay (Baltic Sea, The Sound). Ophelia 50: 113–148
Smirnov A. V., Brown S. (2004) Guide to the methods of study and identification of soil gymnamoebae. Protistology 3: 148–190
Smirnov A., Nassonova E., Berney C., Fahrni J., Bolivar I., Pawlowski J. (2005) Molecular phylogeny and classification of the lobose amoebae. Protist 156: 129–142
Smirnov A. V., Nassonova E. S., Chao E., Cavalier-Smith T. (2007) Phylogeny, evolution and taxonomy of vannellid amoebae. Protist 158: 295–324
Smirnov A. V., Chao E., Nassonova E. S., Cavalier-Smith T. (2011) A revised classification of naked lobose amoebae (Amoebozoa: Lobosa). Protist 162: 545–570
Sprague V., Beckett R. L., Sawyer T. K. (1969) A new species of Paramoeba (Amoebida, Paramoebidae) parasitic in the crab Callinectes sapidus. J. Invertebr. Pathol. 14: 167–174
Stamatakis A. (2006) RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690
Tekle Y., Grant J., Anderson O. R., Nerad T. A., Cole J. C., Patterson D. J., Katz L. A. (2008) Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within ‘Amoebozoa’ upon removal of varying rate classes of SSU-rDNA. Mol. Phylogenet. Evol. 47: 339–352
Van Veen J. (1933) Onderzoek naar het zandtransport van rivieren. De Ingenieur. B. Bouw- en Waterbouwkunde 27: 151–159
Wong F. Y. K., Carson J., Elliott N. G. (2004) 18S ribosomal DNAbased PCR identification of Neoparamoeba pemaquidensis, the agent of amoebic gill disease in sea-farmed salmonids. Dis. Aquat. Org. 60: 65–76
Young N. D., Crosbie P. B. B., Adams M. B., Nowak B. F., Morrison R. N. (2007) Neoparamoeba perurans n. sp., an agent of amoebic gill disease of Atlantic salmon (Salmo salar). Int. J. Parasitol. 37: 1469–1481